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1

β-Hairpins with native-like and non-native hydrogen bonding patterns could form during the refolding of staphylococcal nuclease

Sunita Patel, Prakash Sista, Petety V. Balaji, Yellamraju U. Sasidhar

Journal:

Journal of Molecular Graphics and Modelling

Year:

2006

Language:

english

File:

PDF, 852 KB

english, 2006

2

Conformational mapping and energetics of saccharide–aromatic residue interactions: implications for the discrimination of anomers and epimers and in protein engineering

Kumari, Manju, Sunoj, Raghavan B., Balaji, Petety V.

Journal:

Organic & Biomolecular Chemistry

Year:

2012

Language:

english

File:

PDF, 6.78 MB

english, 2012

3

Molecular dynamics simulations of α2 → 8-linked disialoside: Conformational analysis and implications for binding to proteins

Sheeja V. Vasudevan, Petety V. Balaji

Journal:

Year:

2002

Language:

english

File:

PDF, 259 KB

english, 2002

4

Fold-recognition and comparative modeling of human β3GalT I, II, IV, V and VI and β3GalNAcT I: Prediction of residues conferring acceptor substrate specificity

Ronak Y. Patel, Petety V. Balaji

Journal:

Journal of Molecular Graphics and Modelling

Year:

2007

Language:

english

File:

PDF, 2.55 MB

english, 2007

5

MP2/6-311++G(d,p) study on galactose–aromatic residue analog complexes in different position-orientations of the saccharide relative to aromatic residue

Mannargudi S. Sujatha, Yellamraju U. Sasidhar, Petety V. Balaji

Journal:

Journal of Molecular Structure: THEOCHEM

Year:

2007

Language:

english

File:

PDF, 905 KB

english, 2007

6

Comparative analysis of ganglioside conformations by MD simulations: implications for specific recognition by proteins

Sheeja V Vasudevan, Petety V Balaji

Journal:

Journal of Molecular Structure: THEOCHEM

Year:

2002

Language:

english

File:

PDF, 280 KB

english, 2002

7

Fold-recognition and comparative modeling of human α2,3-sialyltransferases reveal their sequence and structural similarities to CstII fromCampylobacter jejuni

MS Sujatha, Petety V Balaji

Journal:

BMC Structural Biology

Year:

2006

Language:

english

File:

PDF, 2.82 MB

english, 2006

8

Identification of common structural features of binding sites in galactose-specific proteins

M.S. Sujatha, Petety V. Balaji

Journal:

Proteins: Structure, Function, and Bioinformatics

Year:

2004

Language:

english

File:

PDF, 447 KB

english, 2004

9

The sequence TGAAKAVALVL from glyceraldehyde-3-phosphate dehydrogenase displays structural ambivalence and interconverts between α-helical and β-hairpin conformations mediated by collapsed conformational states

Sunita Patel, Petety V. Balaji, Yellamraju U. Sasidhar

Journal:

Journal of Peptide Science

Year:

2007

Language:

english

File:

PDF, 1.61 MB

english, 2007

10

Functional domains of bovine β-1,4 galactosyltransferase

Elizabeth E. Boeggeman, Petety V. Balaji, Pradman K. Qasba

Journal:

Glycoconjugate Journal

Year:

1995

Language:

english

File:

PDF, 1.68 MB

english, 1995

11

Energetics of galactose– and glucose–aromatic amino acid interactions: Implications for binding in galactose-specific proteins

Mannargudi S. Sujatha, Yellamraju U. Sasidhar, Petety V. Balaji

Journal:

Protein Science

Year:

2004

Language:

english

File:

PDF, 297 KB

english, 2004

12

Conformational analysis of Asn-linked oligosaccharides: implications in biological processes

Pradman K. Qasba, Petety V. Balaji, Vallurupalli S.R. Rao

Journal:

Journal of Molecular Structure: THEOCHEM

Year:

1997

Language:

english

File:

PDF, 2.25 MB

english, 1997

13

Griseofulvin stabilizes microtubule dynamics, activates p53 and inhibits the proliferation of MCF-7 cells synergistically with vinblastine

Krishnan Rathinasamy, Bhavya Jindal, Jayant Asthana, Parminder Singh, Petety V Balaji, Dulal Panda

Journal:

Year:

2010

Language:

english

File:

PDF, 1.63 MB

english, 2010

14

Characterization of the conformational and orientational dynamics of ganglioside GM1 in a dipalmitoylphosphatidylcholine bilayer by molecular dynamics simulations

Ronak Y. Patel, Petety V. Balaji

Journal:

Biochimica et Biophysica Acta (BBA) - Biomembranes

Year:

2007

Language:

english

File:

PDF, 1.32 MB

english, 2007

15

Size, orientation and organization of oligomers that nucleate amyloid fibrils: Clues from MD simulations of pre-formed aggregates

Alka Srivastava, Petety V. Balaji

Journal:

Biochimica et Biophysica Acta (BBA) - Proteins and Proteomics

Year:

2012

Language:

english

File:

PDF, 2.56 MB

english, 2012

16

Exploration of CH⋯π mediated stacking interactions in saccharide: aromatic residue complexes through conformational sampling

Manju Kumari, Raghavan B. Sunoj, Petety V. Balaji

Journal:

Carbohydrate Research

Year:

2012

Language:

english

File:

PDF, 1.34 MB

english, 2012

17

Understanding the relationship between the primary structure of proteins and its propensity to be soluble on overexpression in Escherichia coli

Susan Idicula-Thomas, Petety V. Balaji

Journal:

Protein Science

Year:

2005

Language:

english

File:

PDF, 119 KB

english, 2005

18

Comparative genomics analysis of completely sequenced microbial genomes reveals the ubiquity of N-linked glycosylation in prokaryotes

Kumar, Manjeet, Balaji, Petety V.

Journal:

Molecular BioSystems

Year:

2011

Language:

english

File:

PDF, 2.28 MB

english, 2011

19

Quantification of binding affinities of essential sugars with a tryptophan analogue and the ubiquitous role of C–H⋯π interactions

Kumari, Manju, Balaji, Petety V., Sunoj, Raghavan B.

Journal:

Physical Chemistry Chemical Physics

Year:

2011

Language:

english

File:

PDF, 4.56 MB

english, 2011

20

Insights into the Role of the Aromatic Residue in Galactose-Binding Sites: MP2/6-311G++** Study on Galactose− and Glucose−Aromatic Residue Analogue Complexes †

Sujatha, Mannargudi S., Sasidhar, Yellamraju U., Balaji, Petety V.

Journal:

Year:

2005

Language:

english

File:

PDF, 338 KB

english, 2005

21

C-H…pi interactions in proteins: prevalence, pattern of occurrence, residue propensities, location, and contribution to protein stability

Kumar, Manjeet, Balaji, Petety V.

Journal:

Journal of Molecular Modeling

Year:

2014

Language:

english

File:

PDF, 1.03 MB

english, 2014

22

Exploring the Conformational Space for the Interactions of Aromatic Residue Analogs with Biologically Important Saccharides

Kumari, Manju, Sunoj, Raghavan B., Balaji, Petety V.

Journal:

Biophysical Journal

Year:

2010

Language:

english

File:

PDF, 36 KB

english, 2010

23

Dynamics of Ganglioside Headgroup in Lipid Environment: Molecular Dynamics Simulations of GM1 Embedded in Dodecylphosphocholine Micelle

Vasudevan, Sheeja V., Balaji, Petety V.

Journal:

Journal of Physical Chemistry B

Year:

2001

Language:

english

File:

PDF, 109 KB

english, 2001

24

Effect of the Choice of the Pressure Coupling Method on the Spontaneous Aggregation of DPPC Molecules

Patel, Ronak Y., Balaji, Petety V.

Journal:

Journal of Physical Chemistry B

Year:

2005

Language:

english

File:

PDF, 554 KB

english, 2005

25

Characterization of Symmetric and Asymmetric Lipid Bilayers Composed of Varying Concentrations of Ganglioside GM1 and DPPC

Patel, Ronak Y., Balaji, Petety V.

Journal:

Journal of Physical Chemistry B

Year:

2008

Language:

english

File:

PDF, 1.17 MB

english, 2008

26

Expression of deletion constructs of bovine β-1, 4-galactosyltransferase in Escherichia coli : importance of Cysl34 for its activity

Boeggeman, Elizabeth E, Balaji, Petety V, Sethi, Navin, Masibay, Arni S, Qasba, Pradman K

Journal:

Protein Engineering Design and Selection

Year:

1993

Language:

english

File:

PDF, 2.84 MB

english, 1993

27

Structure and Dynamics of Glycosphingolipids in Lipid Bilayers: Insights from Molecular Dynamics Simulations

Patel, Ronak Y., Balaji, Petety V.

Journal:

International Journal of Carbohydrate Chemistry

Year:

2011

Language:

english

File:

PDF, 4.67 MB

english, 2011

28

Molecular dynamics simulations of high-mannose oligosaccharides

Balaji, Petety V., Qasba, Pradman K., Rao, V.S.R.

Journal:

Year:

1994

Language:

english

File:

PDF, 3.72 MB

english, 1994

29

Monomerization alters the dynamics of the lid region in Campylobacter jejuni CstII: an MD simulation study

Prabhakar, Pradeep Kumar, Srivastava, Alka, Rao, K. Krishnamurthy, Balaji, Petety V.

Journal:

Journal of Biomolecular Structure and Dynamics

Year:

2015

Language:

english

File:

PDF, 2.61 MB

english, 2015

30

Molecular events during the early stages of aggregation of GNNQQNY: An all atom MD simulation study of randomly dispersed peptides

Srivastava, Alka, Balaji, Petety V.

Journal:

Journal of Structural Biology

Year:

2015

Language:

english

File:

PDF, 4.06 MB

english, 2015

31

Contribution of C-H … π Interactions to the Affinity and Specificity of Carbohydrate Binding Sites

V. Balaji, Petety

Journal:

Mini-Reviews in Organic Chemistry

Year:

2011

Language:

english

File:

PDF, 596 KB

english, 2011

32

Length and Composition Analysis of the Cytoplasmic, Transmembrane and Stem Regions of Human Golgi Glycosyltransferases

Ronak Y. Patel, Bentham Science Publisher, Petety V. Balaji, Bentham Science Publisher

Journal:

Protein & Peptide Letters

Year:

2007

Language:

english

File:

PDF, 306 KB

english, 2007

33

Interplay of Sequence, Topology and Termini Charge in Determining the Stability of the Aggregates of GNNQQNY Mutants: A Molecular Dynamics Study

Srivastava, Alka, Balaji, Petety V., Langowski, Jörg

Journal:

Year:

2014

Language:

english

File:

PDF, 714 KB

english, 2014

34

Rv3634c from Mycobacterium tuberculosis H37Rv encodes an enzyme with UDP-Gal/Glc and UDP-GalNAc 4-epimerase activities

Pardeshi, Peehu, Rao, K. Krishnamurthy, Balaji, Petety V., Manganelli, Riccardo

Journal:

Year:

2017

Language:

english

File:

PDF, 3.09 MB

english, 2017

35

EpsN from Bacillus subtilis 168 has UDP 2,6-dideoxy 2-acetamido 4-keto glucose aminotransferase activity in vitro

Kaundinya, Chinmayi R, Savithri, Handanahal S, Rao, K Krishnamurthy, Balaji, Petety V

Journal:

Year:

2018

Language:

english

File:

PDF, 1.76 MB

english, 2018

36

In vitro characterization of N-terminal truncated EpsC from Bacillus subtilis 168, a UDP-N-acetylglucosamine 4,6-dehydratase

Kaundinya, Chinmayi R., Savithri, Handanahal S., Krishnamurthy Rao, K., Balaji, Petety V.

Journal:

Archives of Biochemistry and Biophysics

Year:

2018

Language:

english

File:

PDF, 3.33 MB

english, 2018

37

EpsM from Bacillus subtilis 168 has UDP-2,4,6-trideoxy-2-acetamido-4-amino glucose acetyltransferase activity in vitro

Kaundinya, Chinmayi R., Savithri, Handanahal S., Rao, K.Krishnamurthy, Balaji, Petety V.

Journal:

Biochemical and Biophysical Research Communications

Year:

2018

Language:

english

File:

PDF, 701 KB

english, 2018

38

Characterization of Leftâhanded beta Helixâdomains, and identification and functional annotation of proteins containing such domains

Prabha, Anu, Balaji, Petety V.

Journal:

Proteins: Structure, Function, and Bioinformatics

Year:

2020

File:

PDF, 1.55 MB

2020